PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01997g03008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16741 Da    PI: 5.4121
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01997g03008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49.1e-19957149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              krie+k +r++tf+kRr+g++KK +EL+  C+ae+avi fs  g+++ +
  Peinf101Scf01997g03008.1  9 KRIEDKAKRHTTFTKRRQGLFKKTNELCKRCNAEAAVITFSLAGNVFAF 57
                              79******************************************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.595161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-22160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-23375IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-15323IPR002100Transcription factor, MADS-box
PfamPF003197.8E-191057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KTNELCKRCN AEAAVITFSL AGNVFAFGHP  60
SVDDVVNRYM IAKSAPESEV LADNETEKKN EQVVIENNVD EDASSFEMSL EEMGMEQVEE  120
LRLTMEELKR KVVERINGII SSSKNDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617757.13e-72PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_009617758.13e-72PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016448087.13e-72PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_016448088.13e-72PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0V0H6091e-63A0A0V0H609_SOLCH; Putative MADS-box transcription factor 47-like
STRINGPGSC0003DMT4000002101e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-26AGAMOUS-like 61